IL_9N78_038
3D structure
- PDB id
- 9N78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SSU processome maturation and disassembly, State L
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.17 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N78_038 not in the Motif Atlas
- Homologous match to IL_9H3G_194
- Geometric discrepancy: 0.2629
- The information below is about IL_9H3G_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.5
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9N78|1|L1|G|751
9N78|1|L1|A|752
9N78|1|L1|A|753
9N78|1|L1|A|754
9N78|1|L1|A|755
9N78|1|L1|A|756
9N78|1|L1|A|757
9N78|1|L1|U|758
9N78|1|L1|U|759
*
9N78|1|L1|A|791
9N78|1|L1|U|792
9N78|1|L1|A|793
9N78|1|L1|U|794
9N78|1|L1|U|795
9N78|1|L1|A|796
9N78|1|L1|G|797
9N78|1|L1|C|798
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L4
- 40S ribosomal protein S4-A
- Chain L9
- 40S ribosomal protein S9-A
- Chain LD
- 40S ribosomal protein S11-A
- Chain LE
- 40S ribosomal protein S22-A
- Chain SP
- U3 small nucleolar RNA-associated protein 20
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