IL_9N79_056

3D structure

PDB id

9N79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State M

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

9N79|1|L1|A|1436

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N79_056 not in the Motif Atlas

Geometric match to IL_8OI5_019

Geometric discrepancy: 0.3735

The information below is about IL_8OI5_019

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9N79|1|L1|G|1273
9N79|1|L1|C|1274
*
9N79|1|L1|G|1435
9N79|1|L1|A|1436
9N79|1|L1|U|1437

Current chains

Chain L1

18S rRNA

Nearby chains

Chain SZ

Essential nuclear protein 1