IL_9NJF_004
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 9NJF|1|R1|U|100, 9NJF|1|R1|U|102
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NJF_004 not in the Motif Atlas
- Homologous match to IL_5J7L_248
- Geometric discrepancy: 0.3723
- The information below is about IL_5J7L_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37015.1
- Basepair signature
- cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
9NJF|1|R1|G|81
9NJF|1|R1|U|82
9NJF|1|R1|A|83
9NJF|1|R1|A|84
9NJF|1|R1|G|85
*
9NJF|1|R1|C|97
9NJF|1|R1|G|98
9NJF|1|R1|U|99
9NJF|1|R1|U|100
9NJF|1|R1|A|101
9NJF|1|R1|U|102
9NJF|1|R1|A|103
9NJF|1|R1|A|104
9NJF|1|R1|C|105
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 24
- Large ribosomal subunit protein uL24
- Chain 29
- Large ribosomal subunit protein uL29
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