IL_9NJF_009

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2466

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9NJF|1|R1|C|274
9NJF|1|R1|C|275
9NJF|1|R1|U|276
9NJF|1|R1|G|277
9NJF|1|R1|A|278
9NJF|1|R1|A|279
9NJF|1|R1|U|280
9NJF|1|R1|C|281
*
9NJF|1|R1|G|359
9NJF|1|R1|U|360
9NJF|1|R1|G|361
9NJF|1|R1|A|362
9NJF|1|R1|G|363

Current chains

Chain R1

23S ribosomal RNA

Nearby chains