IL_9NJF_011

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

9NJF|1|R1|A|504, 9NJF|1|R1|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_011 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0948

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

9NJF|1|R1|G|481
9NJF|1|R1|A|482
9NJF|1|R1|A|483
9NJF|1|R1|C|484
*
9NJF|1|R1|G|496
9NJF|1|R1|A|497
9NJF|1|R1|G|498
9NJF|1|R1|U|499
9NJF|1|R1|G|500
9NJF|1|R1|A|501
9NJF|1|R1|A|502
9NJF|1|R1|A|503
9NJF|1|R1|A|504
9NJF|1|R1|A|505
9NJF|1|R1|G|506
9NJF|1|R1|A|507
9NJF|1|R1|A|508
9NJF|1|R1|C|509

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 22

Large ribosomal subunit protein uL22

Chain 24

Large ribosomal subunit protein uL24