IL_9NJF_023

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9NJF|1|R1|U|846, 9NJF|1|R1|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_023 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.2591

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

9NJF|1|R1|A|844
9NJF|1|R1|A|845
9NJF|1|R1|U|846
9NJF|1|R1|U|847
9NJF|1|R1|C|848
*
9NJF|1|R1|G|930
9NJF|1|R1|U|931
9NJF|1|R1|U|932
9NJF|1|R1|A|933
9NJF|1|R1|U|934

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 30

50S ribosomal protein L30