IL_9NJF_036

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9NJF|1|R1|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_036 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1374

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

9NJF|1|R1|U|1018
9NJF|1|R1|U|1019
9NJF|1|R1|A|1020
9NJF|1|R1|A|1021
9NJF|1|R1|G|1022
9NJF|1|R1|U|1023
9NJF|1|R1|G|1024
*
9NJF|1|R1|C|1140
9NJF|1|R1|U|1141
9NJF|1|R1|A|1142
9NJF|1|R1|A|1143
9NJF|1|R1|A|1144

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 36

50S ribosomal protein L36