IL_9NJF_037
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9NJF|1|R1|A|1127, 9NJF|1|R1|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NJF_037 not in the Motif Atlas
- Homologous match to IL_5J7L_281
- Geometric discrepancy: 0.0791
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9NJF|1|R1|G|1024
9NJF|1|R1|G|1025
9NJF|1|R1|G|1026
9NJF|1|R1|A|1027
9NJF|1|R1|A|1028
9NJF|1|R1|A|1029
9NJF|1|R1|C|1030
*
9NJF|1|R1|G|1124
9NJF|1|R1|G|1125
9NJF|1|R1|A|1126
9NJF|1|R1|A|1127
9NJF|1|R1|G|1128
9NJF|1|R1|A|1129
9NJF|1|R1|U|1130
9NJF|1|R1|G|1131
9NJF|1|R1|U|1132
9NJF|1|R1|A|1133
9NJF|1|R1|A|1134
9NJF|1|R1|C|1135
9NJF|1|R1|G|1136
9NJF|1|R1|G|1137
9NJF|1|R1|G|1138
9NJF|1|R1|G|1139
9NJF|1|R1|C|1140
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein uL13
- Chain 16
- 50S ribosomal protein L16
- Chain 3
- 50S ribosomal protein L3
- Chain 36
- 50S ribosomal protein L36
- Chain R2
- 5S ribosomal RNA; 5S rRNA
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