IL_9NJF_040

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

9NJF|1|R1|A|1046, 9NJF|1|R1|G|1110, 9NJF|1|R1|A|1111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJF|1|R1|C|1043
9NJF|1|R1|C|1044
9NJF|1|R1|C|1045
9NJF|1|R1|A|1046
9NJF|1|R1|G|1047
9NJF|1|R1|A|1048
9NJF|1|R1|C|1049
9NJF|1|R1|A|1050
9NJF|1|R1|G|1051
9NJF|1|R1|C|1052
*
9NJF|1|R1|G|1107
9NJF|1|R1|U|1108
9NJF|1|R1|C|1109
9NJF|1|R1|G|1110
9NJF|1|R1|A|1111
9NJF|1|R1|G|1112

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 10

Large ribosomal subunit protein uL10

Chain 11

Large ribosomal subunit protein uL11

Chain 36

50S ribosomal protein L36

Chain 6

Large ribosomal subunit protein uL6