IL_9NJF_041

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

9NJF|1|R1|U|1060, 9NJF|1|R1|U|1061, 9NJF|1|R1|A|1077, 9NJF|1|R1|U|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJF|1|R1|G|1059
9NJF|1|R1|U|1060
9NJF|1|R1|U|1061
9NJF|1|R1|G|1062
*
9NJF|1|R1|C|1076
9NJF|1|R1|A|1077
9NJF|1|R1|U|1078
9NJF|1|R1|C|1079

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 11

Large ribosomal subunit protein uL11