IL_9NJF_049

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_049 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.0987

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9NJF|1|R1|C|1357
9NJF|1|R1|G|1358
9NJF|1|R1|A|1359
9NJF|1|R1|G|1360
9NJF|1|R1|G|1361
*
9NJF|1|R1|C|1370
9NJF|1|R1|G|1371
9NJF|1|R1|U|1372
9NJF|1|R1|A|1373
9NJF|1|R1|G|1374

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 28

50S ribosomal protein L28

Chain 34

50S ribosomal protein L34