IL_9NJF_065

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9NJF|1|R1|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_065 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.078

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9NJF|1|R1|C|1686
9NJF|1|R1|G|1687
9NJF|1|R1|U|1688
9NJF|1|R1|A|1689
9NJF|1|R1|A|1690
9NJF|1|R1|C|1691
*
9NJF|1|R1|G|1696
9NJF|1|R1|G|1697
9NJF|1|R1|A|1698
9NJF|1|R1|G|1699
9NJF|1|R1|A|1700
9NJF|1|R1|A|1701
9NJF|1|R1|G|1702

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA