IL_9NJF_076

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

9NJF|1|R1|A|1938, 9NJF|1|R1|U|1944, 9NJF|1|R1|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_076 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.1705

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

9NJF|1|R1|C|1934
9NJF|1|R1|G|1935
9NJF|1|R1|A|1936
9NJF|1|R1|A|1937
9NJF|1|R1|A|1938
9NJF|1|R1|U|1939
9NJF|1|R1|U|1940
9NJF|1|R1|C|1941
9NJF|1|R1|C|1942
9NJF|1|R1|U|1943
9NJF|1|R1|U|1944
9NJF|1|R1|G|1945
*
9NJF|1|R1|C|1961
9NJF|1|R1|C|1962
9NJF|1|R1|U|1963
9NJF|1|R1|G|1964

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA