IL_9NJF_084

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGAUGUGUAGGAUAGG*CCCUUUAA

Length

25 nucleotides

Bulged bases

9NJF|1|R1|G|2112, 9NJF|1|R1|U|2113, 9NJF|1|R1|G|2115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJF|1|R1|U|2105
9NJF|1|R1|U|2106
9NJF|1|R1|G|2107
9NJF|1|R1|A|2108
9NJF|1|R1|U|2109
9NJF|1|R1|G|2110
9NJF|1|R1|U|2111
9NJF|1|R1|G|2112
9NJF|1|R1|U|2113
9NJF|1|R1|A|2114
9NJF|1|R1|G|2115
9NJF|1|R1|G|2116
9NJF|1|R1|A|2117
9NJF|1|R1|U|2118
9NJF|1|R1|A|2119
9NJF|1|R1|G|2120
9NJF|1|R1|G|2121
*
9NJF|1|R1|C|2177
9NJF|1|R1|C|2178
9NJF|1|R1|C|2179
9NJF|1|R1|U|2180
9NJF|1|R1|U|2181
9NJF|1|R1|U|2182
9NJF|1|R1|A|2183
9NJF|1|R1|A|2184

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain Y

Probable ATP-binding protein YbiT