IL_9NJF_085

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGG*CGACCUUGAAAUAC

Length

19 nucleotides

Bulged bases

9NJF|1|R1|U|2166, 9NJF|1|R1|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJF|1|R1|G|2124
9NJF|1|R1|G|2125
9NJF|1|R1|A|2126
9NJF|1|R1|G|2127
9NJF|1|R1|G|2128
*
9NJF|1|R1|C|2161
9NJF|1|R1|G|2162
9NJF|1|R1|A|2163
9NJF|1|R1|C|2164
9NJF|1|R1|C|2165
9NJF|1|R1|U|2166
9NJF|1|R1|U|2167
9NJF|1|R1|G|2168
9NJF|1|R1|A|2169
9NJF|1|R1|A|2170
9NJF|1|R1|A|2171
9NJF|1|R1|U|2172
9NJF|1|R1|A|2173
9NJF|1|R1|C|2174

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain Y

Probable ATP-binding protein YbiT