IL_9NJF_086

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUUUGAAGU*AUGGAGCC

Length

18 nucleotides

Bulged bases

9NJF|1|R1|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJF|1|R1|G|2128
9NJF|1|R1|C|2129
9NJF|1|R1|U|2130
9NJF|1|R1|U|2131
9NJF|1|R1|U|2132
9NJF|1|R1|G|2133
9NJF|1|R1|A|2134
9NJF|1|R1|A|2135
9NJF|1|R1|G|2136
9NJF|1|R1|U|2137
*
9NJF|1|R1|A|2154
9NJF|1|R1|U|2155
9NJF|1|R1|G|2156
9NJF|1|R1|G|2157
9NJF|1|R1|A|2158
9NJF|1|R1|G|2159
9NJF|1|R1|C|2160
9NJF|1|R1|C|2161

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1