IL_9NJF_093

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

9NJF|1|R1|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_093 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.1777

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

9NJF|1|R1|A|2459
9NJF|1|R1|U|2460
9NJF|1|R1|A|2461
*
9NJF|1|R1|U|2489
9NJF|1|R1|G|2490
9NJF|1|R1|U|2491
9NJF|1|R1|U|2492
9NJF|1|R1|U|2493

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16