IL_9NJF_099

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_099 not in the Motif Atlas

Homologous match to IL_4WF9_098

Geometric discrepancy: 0.2482

The information below is about IL_4WF9_098

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9NJF|1|R1|C|2591
9NJF|1|R1|G|2592
*
9NJF|1|R1|C|2601
9NJF|1|R1|A|2602
9NJF|1|R1|G|2603

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain T

Transfer RNA; tRNA

Chain Y

Probable ATP-binding protein YbiT