IL_9NJF_108

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_108 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.079

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

9NJF|1|R1|G|2843
9NJF|1|R1|G|2844
9NJF|1|R1|U|2845
9NJF|1|R1|G|2846
*
9NJF|1|R1|C|2870
9NJF|1|R1|U|2871
9NJF|1|R1|A|2872
9NJF|1|R1|A|2873
9NJF|1|R1|C|2874

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 17

Large ribosomal subunit protein bL17

Chain 19

50S ribosomal protein L19

Chain 3

50S ribosomal protein L3