IL_9NJF_133

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9NJF|1|R3|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_133 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1772

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9NJF|1|R3|G|446
9NJF|1|R3|G|447
9NJF|1|R3|A|448
9NJF|1|R3|G|449
9NJF|1|R3|G|450
*
9NJF|1|R3|C|483
9NJF|1|R3|G|484
9NJF|1|R3|U|485
9NJF|1|R3|U|486
9NJF|1|R3|A|487
9NJF|1|R3|C|488

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sd

30S ribosomal protein S4

Chain sp

Small ribosomal subunit protein bS16