IL_9NJF_157

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

9NJF|1|R3|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_157 not in the Motif Atlas

Homologous match to IL_6CZR_154

Geometric discrepancy: 0.1527

The information below is about IL_6CZR_154

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76319.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9NJF|1|R3|U|1052
9NJF|1|R3|G|1053
9NJF|1|R3|C|1054
9NJF|1|R3|A|1055
9NJF|1|R3|U|1056
*
9NJF|1|R3|A|1204
9NJF|1|R3|U|1205
9NJF|1|R3|G|1206

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sc

Small ribosomal subunit protein uS3

Chain sj

30S ribosomal protein S10

Chain sn

Small ribosomal subunit protein uS14