IL_9NJF_159

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

9NJF|1|R3|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NJF_159 not in the Motif Atlas

Homologous match to IL_4LFB_046

Geometric discrepancy: 0.1572

The information below is about IL_4LFB_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9NJF|1|R3|U|1060
9NJF|1|R3|G|1061
*
9NJF|1|R3|C|1195
9NJF|1|R3|A|1196
9NJF|1|R3|A|1197

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sc

Small ribosomal subunit protein uS3

Chain se

Small ribosomal subunit protein uS5

Chain sj

30S ribosomal protein S10

Chain sn

Small ribosomal subunit protein uS14