IL_9NJF_167

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAUUGGA*UCCAUGAAG

Length

18 nucleotides

Bulged bases

9NJF|1|R3|G|1309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJF|1|R3|C|1303
9NJF|1|R3|G|1304
9NJF|1|R3|G|1305
9NJF|1|R3|A|1306
9NJF|1|R3|U|1307
9NJF|1|R3|U|1308
9NJF|1|R3|G|1309
9NJF|1|R3|G|1310
9NJF|1|R3|A|1311
*
9NJF|1|R3|U|1326
9NJF|1|R3|C|1327
9NJF|1|R3|C|1328
9NJF|1|R3|A|1329
9NJF|1|R3|U|1330
9NJF|1|R3|G|1331
9NJF|1|R3|A|1332
9NJF|1|R3|A|1333
9NJF|1|R3|G|1334

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain 31

Large ribosomal subunit protein bL31

Chain Y

Probable ATP-binding protein YbiT

Chain sm

30S ribosomal protein S13

Chain ss

30S ribosomal protein S19