3D structure

PDB id
9NJF (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CAC*GAAG
Length
7 nucleotides
Bulged bases
9NJF|1|R3|A|1492, 9NJF|1|R3|A|1493
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NJF_171 not in the Motif Atlas
Geometric match to IL_8UO6_002
Geometric discrepancy: 0.3133
The information below is about IL_8UO6_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31737.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
12

Unit IDs

9NJF|1|R3|C|1407
9NJF|1|R3|A|1408
9NJF|1|R3|C|1409
*
9NJF|1|R3|G|1491
9NJF|1|R3|A|1492
9NJF|1|R3|A|1493
9NJF|1|R3|G|1494

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain R1
Large subunit ribosomal RNA; LSU rRNA
Chain sl
Small ribosomal subunit protein uS12

Coloring options:


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