IL_9NJF_171
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 9NJF|1|R3|A|1492, 9NJF|1|R3|A|1493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NJF_171 not in the Motif Atlas
- Geometric match to IL_8UO6_002
- Geometric discrepancy: 0.3133
- The information below is about IL_8UO6_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9NJF|1|R3|C|1407
9NJF|1|R3|A|1408
9NJF|1|R3|C|1409
*
9NJF|1|R3|G|1491
9NJF|1|R3|A|1492
9NJF|1|R3|A|1493
9NJF|1|R3|G|1494
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain R1
- Large subunit ribosomal RNA; LSU rRNA
- Chain sl
- Small ribosomal subunit protein uS12
Coloring options: