IL_9NKL_041

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

9NKL|1|R1|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_041 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.1412

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

9NKL|1|R1|G|1202
9NKL|1|R1|U|1203
9NKL|1|R1|A|1204
9NKL|1|R1|A|1205
9NKL|1|R1|G|1206
*
9NKL|1|R1|U|1240
9NKL|1|R1|A|1241
9NKL|1|R1|U|1242
9NKL|1|R1|C|1243

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 4

Large ribosomal subunit protein uL4