3D structure

PDB id
9NKL (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
9NKL|1|R1|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NKL_064 not in the Motif Atlas
Homologous match to IL_5J7L_308
Geometric discrepancy: 0.102
The information below is about IL_5J7L_308
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_47346.2
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

9NKL|1|R1|C|1686
9NKL|1|R1|G|1687
9NKL|1|R1|U|1688
9NKL|1|R1|A|1689
9NKL|1|R1|A|1690
9NKL|1|R1|C|1691
*
9NKL|1|R1|G|1696
9NKL|1|R1|G|1697
9NKL|1|R1|A|1698
9NKL|1|R1|G|1699
9NKL|1|R1|A|1700
9NKL|1|R1|A|1701
9NKL|1|R1|G|1702

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L2
Chain R3
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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