IL_9NKL_077

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9NKL|1|R1|C|2055, 9NKL|1|R1|U|2613, 9NKL|1|R1|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_077 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.1765

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

9NKL|1|R1|A|2054
9NKL|1|R1|C|2055
9NKL|1|R1|G|2056
*
9NKL|1|R1|C|2612
9NKL|1|R1|U|2613
9NKL|1|R1|A|2614
9NKL|1|R1|U|2615

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 22

Large ribosomal subunit protein uL22

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32