IL_9NKL_084

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUGUGUAG*CUUGAAAUACCACCCUU

Length

25 nucleotides

Bulged bases

9NKL|1|R1|U|2111, 9NKL|1|R1|U|2172, 9NKL|1|R1|A|2173, 9NKL|1|R1|A|2176, 9NKL|1|R1|C|2177, 9NKL|1|R1|C|2178, 9NKL|1|R1|C|2179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NKL|1|R1|A|2108
9NKL|1|R1|U|2109
9NKL|1|R1|G|2110
9NKL|1|R1|U|2111
9NKL|1|R1|G|2112
9NKL|1|R1|U|2113
9NKL|1|R1|A|2114
9NKL|1|R1|G|2115
*
9NKL|1|R1|C|2165
9NKL|1|R1|U|2166
9NKL|1|R1|U|2167
9NKL|1|R1|G|2168
9NKL|1|R1|A|2169
9NKL|1|R1|A|2170
9NKL|1|R1|A|2171
9NKL|1|R1|U|2172
9NKL|1|R1|A|2173
9NKL|1|R1|C|2174
9NKL|1|R1|C|2175
9NKL|1|R1|A|2176
9NKL|1|R1|C|2177
9NKL|1|R1|C|2178
9NKL|1|R1|C|2179
9NKL|1|R1|U|2180
9NKL|1|R1|U|2181

Current chains

Chain R1

23S ribosomal RNA

Nearby chains