IL_9NKL_100

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_100 not in the Motif Atlas

Geometric match to IL_8P9A_344

Geometric discrepancy: 0.3237

The information below is about IL_8P9A_344

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9NKL|1|R1|C|2651
9NKL|1|R1|C|2652
9NKL|1|R1|U|2653
9NKL|1|R1|A|2654
9NKL|1|R1|G|2655
9NKL|1|R1|U|2656
9NKL|1|R1|A|2657
9NKL|1|R1|C|2658
*
9NKL|1|R1|G|2663
9NKL|1|R1|G|2664
9NKL|1|R1|A|2665
9NKL|1|R1|C|2666
9NKL|1|R1|C|2667
9NKL|1|R1|G|2668
9NKL|1|R1|G|2669

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein uL6