3D structure

PDB id
9NKL (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UU*ACUG
Length
6 nucleotides
Bulged bases
9NKL|1|R1|C|2712, 9NKL|1|R1|U|2713
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NKL_103 not in the Motif Atlas
Homologous match to IL_5J7L_349
Geometric discrepancy: 0.1842
The information below is about IL_5J7L_349
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_42626.2
Basepair signature
cWW-cWW
Number of instances in this motif group
14

Unit IDs

9NKL|1|R1|U|2695
9NKL|1|R1|U|2696
*
9NKL|1|R1|A|2711
9NKL|1|R1|C|2712
9NKL|1|R1|U|2713
9NKL|1|R1|G|2714

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 17
Large ribosomal subunit protein bL17
Chain 19
50S ribosomal protein L19

Coloring options:


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