IL_9NKL_131

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_131 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1485

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9NKL|1|R3|U|409
9NKL|1|R3|G|410
9NKL|1|R3|A|411
9NKL|1|R3|A|412
9NKL|1|R3|G|413
9NKL|1|R3|A|414
9NKL|1|R3|A|415
9NKL|1|R3|G|416
*
9NKL|1|R3|U|427
9NKL|1|R3|G|428
9NKL|1|R3|U|429
9NKL|1|R3|A|430
9NKL|1|R3|A|431
9NKL|1|R3|A|432
9NKL|1|R3|G|433

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sd

30S ribosomal protein S4