IL_9NKL_140

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_140 not in the Motif Atlas

Homologous match to IL_4LFB_025

Geometric discrepancy: 0.1505

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

29

Unit IDs

9NKL|1|R3|G|597
9NKL|1|R3|U|598
*
9NKL|1|R3|A|640
9NKL|1|R3|U|641
9NKL|1|R3|A|642
9NKL|1|R3|C|643

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sh

30S ribosomal protein S8

Chain sq

Small ribosomal subunit protein uS17