IL_9NKL_142

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_142 not in the Motif Atlas

Geometric match to IL_5J7L_031

Geometric discrepancy: 0.1665

The information below is about IL_5J7L_031

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

9NKL|1|R3|G|654
9NKL|1|R3|A|655
*
9NKL|1|R3|U|751
9NKL|1|R3|G|752
9NKL|1|R3|A|753
9NKL|1|R3|C|754

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sh

30S ribosomal protein S8

Chain so

Small ribosomal subunit protein uS15