IL_9NKL_168

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NKL_168 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.1227

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9NKL|1|R3|G|1401
9NKL|1|R3|C|1402
9NKL|1|R3|C|1403
9NKL|1|R3|C|1404
*
9NKL|1|R3|G|1497
9NKL|1|R3|U|1498
9NKL|1|R3|A|1499
9NKL|1|R3|A|1500
9NKL|1|R3|C|1501

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain M

mRNA

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain T

Transfer RNA; tRNA