IL_9NL5_008

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_008 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.0659

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9NL5|1|R1|G|188
9NL5|1|R1|G|189
9NL5|1|R1|A|190
9NL5|1|R1|A|191
9NL5|1|R1|C|192
9NL5|1|R1|U|193
9NL5|1|R1|G|194
*
9NL5|1|R1|C|201
9NL5|1|R1|U|202
9NL5|1|R1|A|203
9NL5|1|R1|A|204
9NL5|1|R1|G|205
9NL5|1|R1|U|206
9NL5|1|R1|A|207
9NL5|1|R1|C|208

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L15

Chain 28

50S ribosomal protein L28

Chain 35

Large ribosomal subunit protein bL35