IL_9NL5_021

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_021 not in the Motif Atlas

Homologous match to IL_9DFE_019

Geometric discrepancy: 0.0916

The information below is about IL_9DFE_019

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9NL5|1|R1|U|703
9NL5|1|R1|G|704
9NL5|1|R1|A|705
9NL5|1|R1|A|706
9NL5|1|R1|G|707
*
9NL5|1|R1|U|724
9NL5|1|R1|G|725
9NL5|1|R1|G|726
9NL5|1|R1|A|727
9NL5|1|R1|G|728

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2