IL_9NL5_025

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9NL5|1|R1|U|846, 9NL5|1|R1|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_025 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.3938

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

9NL5|1|R1|A|844
9NL5|1|R1|A|845
9NL5|1|R1|U|846
9NL5|1|R1|U|847
9NL5|1|R1|C|848
*
9NL5|1|R1|G|930
9NL5|1|R1|U|931
9NL5|1|R1|U|932
9NL5|1|R1|A|933
9NL5|1|R1|U|934

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 30

50S ribosomal protein L30