IL_9NL5_077

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

9NL5|1|R1|A|1938, 9NL5|1|R1|U|1944, 9NL5|1|R1|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_077 not in the Motif Atlas

Homologous match to IL_5J7L_319

Geometric discrepancy: 0.1057

The information below is about IL_5J7L_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

9NL5|1|R1|C|1934
9NL5|1|R1|G|1935
9NL5|1|R1|A|1936
9NL5|1|R1|A|1937
9NL5|1|R1|A|1938
9NL5|1|R1|U|1939
9NL5|1|R1|U|1940
9NL5|1|R1|C|1941
9NL5|1|R1|C|1942
9NL5|1|R1|U|1943
9NL5|1|R1|U|1944
9NL5|1|R1|G|1945
*
9NL5|1|R1|C|1961
9NL5|1|R1|C|1962
9NL5|1|R1|U|1963
9NL5|1|R1|G|1964

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA