IL_9NL5_086

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGUAG*CUUGAAAUACCACCC

Length

21 nucleotides

Bulged bases

9NL5|1|R1|U|2111, 9NL5|1|R1|U|2166, 9NL5|1|R1|U|2172, 9NL5|1|R1|A|2173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL5|1|R1|G|2110
9NL5|1|R1|U|2111
9NL5|1|R1|G|2112
9NL5|1|R1|U|2113
9NL5|1|R1|A|2114
9NL5|1|R1|G|2115
*
9NL5|1|R1|C|2165
9NL5|1|R1|U|2166
9NL5|1|R1|U|2167
9NL5|1|R1|G|2168
9NL5|1|R1|A|2169
9NL5|1|R1|A|2170
9NL5|1|R1|A|2171
9NL5|1|R1|U|2172
9NL5|1|R1|A|2173
9NL5|1|R1|C|2174
9NL5|1|R1|C|2175
9NL5|1|R1|A|2176
9NL5|1|R1|C|2177
9NL5|1|R1|C|2178
9NL5|1|R1|C|2179

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain E

EttA