IL_9NL5_088

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAGGUGGGAG*CGACC

Length

18 nucleotides

Bulged bases

9NL5|1|R1|G|2116, 9NL5|1|R1|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL5|1|R1|G|2115
9NL5|1|R1|G|2116
9NL5|1|R1|A|2117
9NL5|1|R1|U|2118
9NL5|1|R1|A|2119
9NL5|1|R1|G|2120
9NL5|1|R1|G|2121
9NL5|1|R1|U|2122
9NL5|1|R1|G|2123
9NL5|1|R1|G|2124
9NL5|1|R1|G|2125
9NL5|1|R1|A|2126
9NL5|1|R1|G|2127
*
9NL5|1|R1|C|2161
9NL5|1|R1|G|2162
9NL5|1|R1|A|2163
9NL5|1|R1|C|2164
9NL5|1|R1|C|2165

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain E

EttA