IL_9NL5_089

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGCUUUGAAGU*AUGGAGCC

Length

19 nucleotides

Bulged bases

9NL5|1|R1|U|2132, 9NL5|1|R1|A|2158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL5|1|R1|G|2127
9NL5|1|R1|G|2128
9NL5|1|R1|C|2129
9NL5|1|R1|U|2130
9NL5|1|R1|U|2131
9NL5|1|R1|U|2132
9NL5|1|R1|G|2133
9NL5|1|R1|A|2134
9NL5|1|R1|A|2135
9NL5|1|R1|G|2136
9NL5|1|R1|U|2137
*
9NL5|1|R1|A|2154
9NL5|1|R1|U|2155
9NL5|1|R1|G|2156
9NL5|1|R1|G|2157
9NL5|1|R1|A|2158
9NL5|1|R1|G|2159
9NL5|1|R1|C|2160
9NL5|1|R1|C|2161

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1