IL_9NL5_096

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

9NL5|1|R1|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_096 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.1771

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

9NL5|1|R1|A|2459
9NL5|1|R1|U|2460
9NL5|1|R1|A|2461
*
9NL5|1|R1|U|2489
9NL5|1|R1|G|2490
9NL5|1|R1|U|2491
9NL5|1|R1|U|2492
9NL5|1|R1|U|2493

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain 27

Large ribosomal subunit protein bL27