IL_9NL5_104

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_104 not in the Motif Atlas

Geometric match to IL_8P9A_369

Geometric discrepancy: 0.2836

The information below is about IL_8P9A_369

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9NL5|1|R1|C|2651
9NL5|1|R1|C|2652
9NL5|1|R1|U|2653
9NL5|1|R1|A|2654
9NL5|1|R1|G|2655
9NL5|1|R1|U|2656
9NL5|1|R1|A|2657
9NL5|1|R1|C|2658
*
9NL5|1|R1|G|2663
9NL5|1|R1|G|2664
9NL5|1|R1|A|2665
9NL5|1|R1|C|2666
9NL5|1|R1|C|2667
9NL5|1|R1|G|2668
9NL5|1|R1|G|2669

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 6

Large ribosomal subunit protein uL6