IL_9NL5_117

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_117 not in the Motif Atlas

Homologous match to IL_4WF9_126

Geometric discrepancy: 0.2079

The information below is about IL_4WF9_126

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

9NL5|1|R2|C|30
9NL5|1|R2|C|31
*
9NL5|1|R2|G|51
9NL5|1|R2|A|52
9NL5|1|R2|A|53
9NL5|1|R2|G|54

Current chains

Chain R2

5S ribosomal RNA

Nearby chains

Chain 18

Large ribosomal subunit protein uL18

Chain 5

50S ribosomal protein L5