IL_9NL5_143

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9NL5|1|R3|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_143 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0805

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

9NL5|1|R3|C|569
9NL5|1|R3|G|570
9NL5|1|R3|U|571
9NL5|1|R3|A|572
9NL5|1|R3|A|573
9NL5|1|R3|A|574
9NL5|1|R3|G|575
*
9NL5|1|R3|C|880
9NL5|1|R3|G|881

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sq

Small ribosomal subunit protein uS17