IL_9NL5_181

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

9NL5|1|R3|A|1441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_181 not in the Motif Atlas

Geometric match to IL_8VMB_002

Geometric discrepancy: 0.3475

The information below is about IL_8VMB_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9NL5|1|R3|U|1440
9NL5|1|R3|A|1441
9NL5|1|R3|G|1442
*
9NL5|1|R3|C|1460
9NL5|1|R3|G|1461

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L19

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain st

30S ribosomal protein S20