IL_9NL5_182

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAAC*GAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL5_182 not in the Motif Atlas

Homologous match to IL_5J7L_065

Geometric discrepancy: 0.1519

The information below is about IL_5J7L_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31531.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

13

Unit IDs

9NL5|1|R3|U|1445
9NL5|1|R3|A|1446
9NL5|1|R3|A|1447
9NL5|1|R3|C|1448
*
9NL5|1|R3|G|1455
9NL5|1|R3|A|1456
9NL5|1|R3|G|1457

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain st

30S ribosomal protein S20