IL_9NL6_006

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL6_006 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.0709

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9NL6|1|R1|G|188
9NL6|1|R1|G|189
9NL6|1|R1|A|190
9NL6|1|R1|A|191
9NL6|1|R1|C|192
9NL6|1|R1|U|193
9NL6|1|R1|G|194
*
9NL6|1|R1|C|201
9NL6|1|R1|U|202
9NL6|1|R1|A|203
9NL6|1|R1|A|204
9NL6|1|R1|G|205
9NL6|1|R1|U|206
9NL6|1|R1|A|207
9NL6|1|R1|C|208

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 28

50S ribosomal protein L28