IL_9NL6_041

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAA*UCAC

Length

40 nucleotides

Bulged bases

9NL6|1|R1|U|1061, 9NL6|1|R1|U|1065, 9NL6|1|R1|U|1066, 9NL6|1|R1|A|1070, 9NL6|1|R1|C|1072, 9NL6|1|R1|G|1074, 9NL6|1|R1|C|1075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL6|1|R1|G|1055
9NL6|1|R1|G|1056
9NL6|1|R1|A|1057
9NL6|1|R1|U|1058
9NL6|1|R1|G|1059
9NL6|1|R1|U|1060
9NL6|1|R1|U|1061
9NL6|1|R1|G|1062
9NL6|1|R1|G|1063
9NL6|1|R1|C|1064
9NL6|1|R1|U|1065
9NL6|1|R1|U|1066
9NL6|1|R1|A|1067
9NL6|1|R1|G|1068
9NL6|1|R1|A|1069
9NL6|1|R1|A|1070
9NL6|1|R1|G|1071
9NL6|1|R1|C|1072
9NL6|1|R1|A|1073
9NL6|1|R1|G|1074
9NL6|1|R1|C|1075
9NL6|1|R1|C|1076
9NL6|1|R1|A|1077
9NL6|1|R1|U|1078
9NL6|1|R1|C|1079
9NL6|1|R1|A|1080
9NL6|1|R1|U|1081
9NL6|1|R1|U|1082
9NL6|1|R1|U|1083
9NL6|1|R1|A|1084
9NL6|1|R1|A|1085
9NL6|1|R1|A|1086
9NL6|1|R1|G|1087
9NL6|1|R1|A|1088
9NL6|1|R1|A|1089
9NL6|1|R1|A|1090
*
9NL6|1|R1|U|1101
9NL6|1|R1|C|1102
9NL6|1|R1|A|1103
9NL6|1|R1|C|1104

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain 36

50S ribosomal protein L36