IL_9NL6_078

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

9NL6|1|R1|A|1938, 9NL6|1|R1|U|1944, 9NL6|1|R1|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NL6_078 not in the Motif Atlas

Homologous match to IL_5J7L_319

Geometric discrepancy: 0.1162

The information below is about IL_5J7L_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

9NL6|1|R1|C|1934
9NL6|1|R1|G|1935
9NL6|1|R1|A|1936
9NL6|1|R1|A|1937
9NL6|1|R1|A|1938
9NL6|1|R1|U|1939
9NL6|1|R1|U|1940
9NL6|1|R1|C|1941
9NL6|1|R1|C|1942
9NL6|1|R1|U|1943
9NL6|1|R1|U|1944
9NL6|1|R1|G|1945
*
9NL6|1|R1|C|1961
9NL6|1|R1|C|1962
9NL6|1|R1|U|1963
9NL6|1|R1|G|1964

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA